Development Statistics for /trunk

Lines of Code

Top 10 Authors

Tag Cloud of Words in Commit Log Messages

about alignment always arbdb assertion avoid awar before build button call callback change check class cleanup code color command comment create data debug default define delete depend display duplicate empty error export field file filter fixed fixes format function gene generate global group handling header help include instead interface line link list longer made make makefile memory menu merge message miss mode move name needed only output parameter position print probe prototype remove rename replace result return rewrote save search sequence server several size species static target test tree type unused update uses using value variable version warn window wrong

Directories

[root] (16 files, 5365 lines)
     AISC (16 files, 4226 lines)
     AISC_COM (1 files, 16 lines)
         AISC (8 files, 2032 lines)
         C (15 files, 3115 lines)
     AISC_MKPTPS (3 files, 1833 lines)
     ALEIO (0 files, 0 lines)
     ALIV3 (0 files, 0 lines)
     ARBDB (78 files, 38339 lines)
         EXAMPLES (0 files, 0 lines)
     ARBDB2 (0 files, 0 lines)
     ARBDBPP (0 files, 0 lines)
     ARBDBS (0 files, 0 lines)
     ARBDB_COMPRESS (0 files, 0 lines)
     ARB_GDE (16 files, 5206 lines)
     AWDEMO (0 files, 0 lines)
     AWT (34 files, 11112 lines)
     AWTC (6 files, 998 lines)
     AWTI (7 files, 1827 lines)
     BERGEY (0 files, 0 lines)
     BINDEP (14 files, 74 lines)
     BUGEX (1 files, 208 lines)
     CAT (0 files, 0 lines)
     CHIP (0 files, 0 lines)
     CONSENSUS_TREE (15 files, 1734 lines)
     CONVERTALN (36 files, 6428 lines)
     CORE (28 files, 4227 lines)
     DBSERVER (3 files, 553 lines)
     DIST (20 files, 7047 lines)
     DUMMYINC (0 files, 0 lines)
     EDIT (0 files, 0 lines)
     EDIT4 (47 files, 28873 lines)
     EISPACK (7 files, 29479 lines)
     GDE (2 files, 101 lines)
         AxML (5 files, 5983 lines)
         CLUSTAL (13 files, 4954 lines)
         CLUSTALW (33 files, 21327 lines)
         CORE (0 files, 0 lines)
         FASTDNAML (7 files, 6447 lines)
         HGL_SRC (0 files, 0 lines)
         LOOPTOOL (0 files, 0 lines)
         MOLPHY (0 files, 0 lines)
             doc (0 files, 0 lines)
             utl (0 files, 0 lines)
         PHYLIP (66 files, 71352 lines)
             doc (42 files, 21478 lines)
         PHYML (22 files, 15180 lines)
         RAxML (26 files, 41026 lines)
         SUPPORT (11 files, 4887 lines)
         TREEPUZZLE (6 files, 854 lines)
             data (0 files, 0 lines)
             doc (3 files, 1653 lines)
             src (18 files, 17676 lines)
     GDEHELP (9 files, 8444 lines)
         DATA_FILES (1 files, 9 lines)
         FASTA (0 files, 0 lines)
             GENBANK (1 files, 1500 lines)
             MATRIX (9 files, 258 lines)
         HELP_PLAIN (4 files, 296 lines)
         HELP_WRITTEN (2 files, 177 lines)
         MENUS (17 files, 1556 lines)
         PHYLIP (0 files, 0 lines)
     GENOM (17 files, 5630 lines)
     GENOM_IMPORT (18 files, 2763 lines)
     GL (1 files, 62 lines)
         glAW (10 files, 1493 lines)
         glpng (4 files, 718 lines)
     HEADERLIBS (5 files, 176 lines)
     HELP_SOURCE (12 files, 2873 lines)
         genhelp (4 files, 94 lines)
         oldhelp (297 files, 18330 lines)
             prompt (1 files, 31 lines)
             seer (0 files, 0 lines)
     ISLAND_HOPPING (12 files, 2091 lines)
     JAVALIB (0 files, 0 lines)
     MERGE (16 files, 5757 lines)
     MULTI_PROBE (21 files, 6181 lines)
     NALIGNER (26 files, 7992 lines)
     NAMES (4 files, 1430 lines)
     NAMES_COM (7 files, 188 lines)
     NIELS_F77 (0 files, 0 lines)
     NTREE (40 files, 14868 lines)
     ORS_CGI (0 files, 0 lines)
     ORS_COM (0 files, 0 lines)
     ORS_SERVER (0 files, 0 lines)
     PARSIMONY (22 files, 7449 lines)
     PERL2ARB (11 files, 1132 lines)
     PERLTOOLS (1 files, 66 lines)
     PERL_SCRIPTS (0 files, 0 lines)
         ARBTOOLS (2 files, 512 lines)
             IFTHELP (3 files, 246 lines)
         BIOPERL (2 files, 119 lines)
         GENERAL (1 files, 99 lines)
         GENOME (3 files, 452 lines)
         IFTHELP (0 files, 0 lines)
         MAUS (0 files, 0 lines)
         SAI (2 files, 158 lines)
         SPECIES (3 files, 273 lines)
         test (5 files, 212 lines)
     PGT (32 files, 10100 lines)
         xslt (1 files, 0 lines)
     PHYLO (12 files, 2474 lines)
     PRIMER_DESIGN (20 files, 3063 lines)
     PROBE (18 files, 6627 lines)
     PROBE_COM (7 files, 359 lines)
     PROBE_DESIGN (8 files, 3379 lines)
     PROBE_SERVER (0 files, 0 lines)
         PROBE_GROUP (0 files, 0 lines)
         PROBE_GROUP_DESIGN (0 files, 0 lines)
         TREE_MERGE (0 files, 0 lines)
         WORKER (0 files, 0 lines)
     PROBE_SET (28 files, 6715 lines)
     PROBE_WEB (0 files, 0 lines)
         CLIENT (0 files, 0 lines)
         SERVER (0 files, 0 lines)
     READSEQ (9 files, 5236 lines)
     RNA3D (20 files, 4787 lines)
         Attic (0 files, 0 lines)
             OPENGL (0 files, 0 lines)
             data (0 files, 0 lines)
             images (0 files, 0 lines)
     RNACMA (10 files, 1365 lines)
     SECEDIT (28 files, 8418 lines)
     SEER (0 files, 0 lines)
     SEQ_QUALITY (12 files, 2445 lines)
     SERVERCNTRL (4 files, 511 lines)
     SH (27 files, 1512 lines)
     SL (1 files, 97 lines)
         ALIVIEW (4 files, 167 lines)
         AP_TREE (4 files, 1928 lines)
         ARB_TREE (4 files, 825 lines)
         AW_HELIX (4 files, 363 lines)
         AW_NAME (5 files, 993 lines)
         DB_QUERY (5 files, 3164 lines)
         DB_SCANNER (4 files, 750 lines)
         DB_UI (3 files, 1665 lines)
         FAST_ALIGNER (8 files, 5837 lines)
         FILE_BUFFER (0 files, 0 lines)
         FILTER (6 files, 634 lines)
         GUI_ALIVIEW (9 files, 1223 lines)
         HELIX (6 files, 800 lines)
         ITEMS (7 files, 819 lines)
         LOCATION (4 files, 615 lines)
         MATRIX (4 files, 283 lines)
         NDS (3 files, 860 lines)
         NEIGHBOURJOIN (5 files, 427 lines)
         PRONUC (8 files, 1933 lines)
         PTCLEAN (4 files, 248 lines)
         REFENTRIES (3 files, 397 lines)
         REGEXPR (4 files, 288 lines)
         SEQIO (5 files, 1006 lines)
         SEQUENCE (11 files, 1339 lines)
         TRANSLATE (4 files, 277 lines)
         TREEDISP (7 files, 4473 lines)
         TREE_ADMIN (4 files, 331 lines)
         TREE_READ (5 files, 630 lines)
         TREE_WRITE (4 files, 535 lines)
     SOURCE_TOOLS (46 files, 7620 lines)
         docs (1 files, 79 lines)
     STAT (9 files, 2004 lines)
     TEMPLATES (26 files, 6104 lines)
     TEST (0 files, 0 lines)
     TESTAWT (0 files, 0 lines)
     TESTVECTORFONT (0 files, 0 lines)
     TOOLS (22 files, 8377 lines)
     TREEGEN (17 files, 1567 lines)
     TREE_COMPRESS (0 files, 0 lines)
     TRS (0 files, 0 lines)
     UNIT_TESTER (17 files, 4517 lines)
         flags (1 files, 2 lines)
         run (16 files, 3222 lines)
             consense (0 files, 0 lines)
                 1 (7 files, 467 lines)
                 2 (5 files, 889 lines)
                 3 (4 files, 1539 lines)
             display (16 files, 13962 lines)
             general (6 files, 92 lines)
             impexp (37 files, 4407 lines)
             tools (3 files, 153 lines)
         valgrind (2 files, 179 lines)
     WETC (3 files, 107 lines)
     WINDOW (66 files, 22006 lines)
     XML (4 files, 499 lines)
     XML_IMPORT (2 files, 47 lines)
         IMP_TREE (9 files, 636 lines)
     bin (1 files, 24 lines)
     doc (1 files, 85 lines)
     etc (6 files, 5366 lines)
     fig2dev (0 files, 0 lines)
         dev (0 files, 0 lines)
     lib (6 files, 12056 lines)
         BUGS (1 files, 8 lines)
         addlibs (1 files, 14 lines)
         arb_default (8 files, 750 lines)
         dtd (2 files, 92 lines)
         export (14 files, 130 lines)
         icons (0 files, 0 lines)
         import (33 files, 1933 lines)
             nonformats (7 files, 783 lines)
         inputMasks (8 files, 342 lines)
         macros (6 files, 121 lines)
             ARB (0 files, 0 lines)
                 SEQ_DATA (1 files, 111 lines)
         nas (2 files, 16 lines)
         pictures (92 files, 5073 lines)
             PARS (0 files, 0 lines)
             awt (16 files, 507 lines)
             awtc (2 files, 36 lines)
             consensus (4 files, 1053 lines)
             cpro (7 files, 216 lines)
             demo (0 files, 0 lines)
             edit4 (14 files, 1381 lines)
             etc (0 files, 0 lines)
             faligner (3 files, 148 lines)
             findcorr (0 files, 0 lines)
             merge (15 files, 551 lines)
             pars (2 files, 138 lines)
             phylo (5 files, 95 lines)
             seer (0 files, 0 lines)
             unused (5 files, 675 lines)
                 findcorr (4 files, 129 lines)
             window (1 files, 30 lines)
         pixmaps (94 files, 2729 lines)
             edit (20 files, 387 lines)
                 unused (15 files, 236 lines)
             icons (7 files, 273 lines)
                 unused (8 files, 251 lines)
             merge (2 files, 111 lines)
             pgt (22 files, 1217 lines)
             print (6 files, 139 lines)
                 unused (2 files, 50 lines)
             seer (0 files, 0 lines)
             unused (43 files, 1535 lines)
         protein_2nd_structure (0 files, 0 lines)
         rna3d (5 files, 4617 lines)
             images (22 files, 0 lines)
         sellists (9 files, 99 lines)
         submit (3 files, 1061 lines)
     ptpan (4 files, 57 lines)
     util (14 files, 1077 lines)